SMTL ID : 4px3.1 (1 other biounit)

Human GKRP bound to AMG-3295 and Sorbitol-6-phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

1 x 2WX: N-[(R)-1-benzothiophen-2-yl(2-chlorophenyl)methyl]-3,4-dihydro-2H-1,5-benzodioxepine-7-sulfonamide(Non-covalent)

2WX.1: 17 residues within 4Å: Chain A: H.21, V.22, I.23, Y.36, A.39, V.40, P.41, E.44, G.193, M.225, R.227, N.228, D.229, K.526, W.529, A.533, Q.536 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.22, A:V.40, A:P.41, A:E.44, A:R.227, A:W.529, A:A.533 Hydrogen bonds: A:I.23, A:N.228 pi-Stacking: A:H.21 Halogen bonds: A:K.526

1 x S6P: D-SORBITOL-6-PHOSPHATE(Non-covalent)

S6P.2: 15 residues within 4Å: Chain A: G.119, G.120, T.121, S.122, E.162, E.165, S.191, V.192, G.193, A.196, S.269, S.270, R.271, H.363, K.526 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.121, A:T.121, A:S.122, A:S.122, A:E.162, A:E.162, A:V.192, A:G.193, A:A.196, A:S.269, A:S.270, A:S.270, A:R.271, A:K.526 Water bridges: A:E.165, A:S.191 Salt bridges: A:K.526

13 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 3 residues within 4Å: Chain A: Y.480, F.484, I.485 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: L.518, C.610 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.85, G.262 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: A.58, L.508 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: T.310 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: R.161, G.163 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: G.15, K.17, R.18 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: E.37, K.45, S.46 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: T.16, F.19, K.543 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: C.205, N.208 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: Q.541, S.542, R.545 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: S.88, E.89 Ligand excluded by PLIP IOD.15: 3 residues within 4Å: Chain A: S.523, V.573, H.577 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pennington, L.D. et al., Discovery and Structure-Guided Optimization of Diarylmethanesulfonamide Disruptors of GK-GKRP Binding. To be Published

Release Date

2015-05-13

Peptides

Glucokinase regulatory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase regulatory protein

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