SMTL ID : 4ohp.2 (1 other biounit)

Human GKRP bound to AMG-3227 and S6P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 2TJ: 4-[(2S)-4-[(6-aminopyridin-3-yl)sulfonyl]-2-(prop-1-yn-1-yl)piperazin-1-yl]-N-methylbenzenesulfonamide(Non-covalent)

2TJ.1: 19 residues within 4Å: Chain A: Y.36, V.40, P.41, E.44, S.46, G.193, N.221, M.225, A.226, R.227, D.229, H.516, K.526, W.529, R.530, A.533, Q.536, R.537 Ligands: IOD.11 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.40, A:E.44, A:A.533, A:A.533, A:A.533 Hydrogen bonds: A:S.46, A:N.221, A:M.225, A:R.537 Water bridges: A:Y.36, A:R.537 Salt bridges: A:E.44

1 x S6P: D-SORBITOL-6-PHOSPHATE(Non-covalent)

S6P.2: 15 residues within 4Å: Chain A: G.119, G.120, T.121, S.122, E.162, E.165, S.191, V.192, G.193, A.196, S.269, S.270, R.271, H.363, K.526 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:T.121, A:T.121, A:S.122, A:V.192, A:G.193, A:A.196, A:S.269, A:S.270, A:R.271, A:H.363, A:T.364, A:K.526 Water bridges: A:E.162, A:E.165, A:S.191, A:S.270, A:N.524, A:K.526 Salt bridges: A:K.526

13 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 4 residues within 4Å: Chain A: E.479, Y.480, F.484, I.485 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: V.613 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.85, G.262 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: T.310 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: D.57, A.58, L.508 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: R.161, G.163 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: Q.541, S.542 Ligand excluded by PLIP IOD.10: 4 residues within 4Å: Chain A: G.15, T.16, K.17, A.566 Ligand excluded by PLIP IOD.11: 5 residues within 4Å: Chain A: E.37, K.45, S.46, R.537 Ligands: 2TJ.1 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: F.19, K.543 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: L.457, S.470 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain A: C.205, N.208, W.234 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain A: T.25, S.542 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.16: 6 residues within 4Å: Chain A: G.366, D.519, R.521, K.579, E.580, Q.581 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.519, A:K.579, A:Q.581 Water bridges: A:D.519, A:R.521, A:I.522, A:V.582

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.17: 4 residues within 4Å: Chain A: D.54, K.55, A.56, D.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.56 SO4.18: 3 residues within 4Å: Chain A: K.30, L.33, S.34 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.30 SO4.19: 4 residues within 4Å: Chain A: Q.348, T.349, I.352, L.376 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.348, A:T.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishimura, N. et al., Small molecule disruptors of the glucokinase-glucokinase regulatory protein interaction: 3. Structure-activity relationships within the aryl carbinol region of the N-arylsulfonamido-N'-arylpiperazine series. J.Med.Chem. (2014)

Release Date

2014-07-30

Peptides

Glucokinase regulatory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glucokinase regulatory protein

Related Entries With Identical Sequence