SMTL ID : 4pxs.1 (1 other biounit)

Human GKRP bound to AMG-0265 (N-[(R)-(2-CHLOROPHENYL){7-[4-(2-HYDROXYPROPAN-2-YL) PYRIDIN-2-YL]-1-BENZOTHIOPHEN-2-YL}METHYL]CYCLOPROPANESULFONAMIDE) and Sorbitol-6-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 2Y6: N-[(R)-(2-chlorophenyl){7-[4-(2-hydroxypropan-2-yl)pyridin-2-yl]-1-benzothiophen-2-yl}methyl]cyclopropanesulfonamide(Non-covalent)

2Y6.1: 16 residues within 4Å: Chain A: H.21, Y.36, A.39, V.40, P.41, E.44, G.193, M.225, R.227, N.228, D.229, H.516, K.526, W.529, A.533, R.537 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.40, A:V.40, A:P.41, A:E.44, A:R.227, A:W.529, A:A.533 Hydrogen bonds: A:Y.36, A:Y.36, A:N.228, A:R.537 Halogen bonds: A:K.526

1 x S6P: D-SORBITOL-6-PHOSPHATE(Non-covalent)

S6P.2: 16 residues within 4Å: Chain A: G.119, G.120, T.121, S.122, E.162, E.165, I.190, S.191, V.192, G.193, A.196, S.269, S.270, R.271, H.363, K.526 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.121, A:T.121, A:S.122, A:S.122, A:V.192, A:G.193, A:A.196, A:S.269, A:R.271, A:H.363, A:K.526 Water bridges: A:E.162, A:E.162, A:E.162, A:E.165 Salt bridges: A:K.526

13 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 3 residues within 4Å: Chain A: Y.480, F.484, I.485 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.85, G.262 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: A.58, K.330, L.508 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: T.310 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: R.161, G.163 Ligand excluded by PLIP IOD.9: 4 residues within 4Å: Chain A: G.15, T.16, K.17, R.18 Ligand excluded by PLIP IOD.10: 4 residues within 4Å: Chain A: E.37, K.45, S.46, R.537 Ligand excluded by PLIP IOD.11: 4 residues within 4Å: Chain A: G.15, T.16, F.19, K.543 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: K.176, C.205, N.208 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: Q.541, S.542, R.545 Ligand excluded by PLIP IOD.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain A: S.523, H.577 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pennington, L.D. et al., Discovery and Structure-Guided Optimization of Diarylmethanesulfonamide Disruptors of GK-GKRP Binding. To be Published

Release Date

2015-03-18

Peptides

Glucokinase regulatory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase regulatory protein

Related Entries With Identical Sequence