SMTL ID : 4r2u.1 (1 other biounit)

Crystal Structure of PPARgamma in complex with SR1664

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x 3JX: 4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid(Non-covalent)

3JX.1: 21 residues within 4Å: Chain A: I.79, F.80, G.82, C.83, Q.84, R.86, S.87, H.121, I.124, Y.125, L.128, I.139, S.140, F.161, M.162, K.165, H.247, L.251, L.263, L.267, Y.271 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:R.86, A:R.86, A:I.124, A:Y.125, A:L.128, A:I.139, A:F.161, A:F.161, A:L.267 Hydrogen bonds: A:F.80, A:S.140, A:H.247 Water bridges: A:E.141 Salt bridges: A:R.86 pi-Cation interactions: A:H.247 3JX.2: 19 residues within 4Å: Chain B: F.62, H.64, I.79, F.80, G.82, C.83, Q.84, R.86, S.87, H.121, I.124, Y.125, L.128, I.139, S.140, M.162, K.165, H.247, L.251 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.79, B:I.79, B:Q.84, B:R.86, B:R.86, B:I.124, B:L.128, B:I.139, B:L.251 Hydrogen bonds: B:Y.125, B:Y.125, B:S.140, B:K.165 Salt bridges: B:H.64, B:R.86 pi-Stacking: B:F.62 pi-Cation interactions: B:H.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marciano, D.P. et al., Pharmacological repression of PPAR gamma promotes osteogenesis. Nat Commun (2015)

Release Date

2015-07-01

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Peroxisome proliferator-activated receptor gamma

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