SMTL ID : 8fhf.1 (1 other biounit)

Crystal structure of PPARgamma ligand-binding domain in complex with ZINC5672437

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x XZK: N-(4-carbamoylphenyl)-2-chloro-5-nitrobenzamide(Non-covalent)

XZK.1: 15 residues within 4Å: Chain A: F.80, C.83, Q.84, R.86, S.87, H.121, I.124, Y.125, L.128, L.131, F.161, H.247, L.251, Y.271 Ligands: KNA.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.80, A:F.80, A:Q.84, A:R.86, A:I.124, A:L.128, A:L.128, A:F.161 Hydrogen bonds: A:C.83, A:Y.125

1 x KNA: nonanoic acid(Non-covalent)

KNA.2: 10 residues within 4Å: Chain A: G.82, C.83, R.86, V.137, L.138, I.139, S.140, M.146, L.151 Ligands: XZK.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.86, A:I.139, A:I.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Crystal structure of PPARgamma ligand-binding domain in complex with ZINC5672437. To Be Published

Release Date

2024-03-20

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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