SMTL ID : 6md4.1 (1 other biounit)

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Rosiglitazone and Oleic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x BRL: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)(Non-covalent)

BRL.1: 14 residues within 4Å: Chain A: I.79, F.80, G.82, C.83, Q.84, S.87, H.121, Y.125, L.128, I.139, M.162, H.247, Y.271 Ligands: OLA.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.125 Hydrogen bonds: A:S.87, A:Y.271

1 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 14 residues within 4Å: Chain A: L.26, F.85, R.86, E.89, I.124, M.127, L.128, L.131, L.138, I.139, S.140, E.141, G.142 Ligands: BRL.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.85, A:F.85, A:R.86, A:R.86, A:R.86, A:M.127, A:L.128, A:L.128, A:L.131, A:I.139, A:E.141 Hydrogen bonds: A:L.138, A:E.141, A:G.142 Water bridges: A:R.86 Salt bridges: A:R.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife (2018)

Release Date

2019-01-09

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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