SMTL ID : 4u7q.1

Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x 3EM: N~2~-({[7-(diethylamino)-2-oxo-2H-chromen-4-yl]methoxy}carbonyl)-N-[(2S,4S,5S)-4-hydroxy-1,6-diphenyl-5-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}hexan-2-yl]-L-valinamide(Non-covalent)

3EM.1: 23 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.29, D.30, I.47, G.48, I.50, T.80, P.81, I.84 Chain B: D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, V.82, I.84 19 PLIP interactions: 11 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:A.28, B:D.30, B:I.47, B:I.50, B:V.82, B:I.84, A:I.50, A:T.80, A:P.81, A:I.84 Hydrogen bonds: B:D.25, B:G.27, B:D.29, B:G.48, B:I.50, A:G.27, A:D.29, A:D.30, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schimer, J. et al., Triggering HIV polyprotein processing by light using rapid photodegradation of a tight-binding protease inhibitor. Nat Commun (2015)

Release Date

2015-03-25

Peptides

V-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

V-1 protease

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