SMTL ID : 4ui9.1

Atomic structure of the human Anaphase-Promoting Complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.60 Å

Oligo State

hetero-1-1-2-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-2-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.23, C.26, H.56, C.59 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.23, B:C.26, B:H.56, B:C.59 ZN.2: 4 residues within 4Å: Chain B: C.51, H.53, C.73, C.76 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.53, B:C.73, B:C.76 ZN.3: 5 residues within 4Å: Chain B: C.34, D.36, C.37, C.44, H.58 No protein-ligand interaction detected (PLIP) ZN.4: 6 residues within 4Å: Chain R: C.378, R.380, C.381, S.383, C.396, C.401 No protein-ligand interaction detected (PLIP) ZN.5: 4 residues within 4Å: Chain R: C.406, C.409, H.414, C.419 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, L. et al., Atomic Structure of the Apc and its Mechanism of Protein Ubiquitination. Nature (2015)

Release Date

2015-06-17

Peptides

ANAPHASE-PROMOTING COMPLEX SUBUNIT 1: A
ANAPHASE-PROMOTING COMPLEX SUBUNIT 11: B
CELL DIVISION CYCLE PROTEIN 23 HOMOLOG: CP
ANAPHASE-PROMOTING COMPLEX SUBUNIT 15: D
ANAPHASE-PROMOTING COMPLEX SUBUNIT 16: E
CELL DIVISION CYCLE PROTEIN 27 HOMOLOG: FH
ANAPHASE-PROMOTING COMPLEX SUBUNIT CDC26: G
ANAPHASE-PROMOTING COMPLEX SUBUNIT 4: I
CELL DIVISION CYCLE PROTEIN 16 HOMOLOG: J
CELL DIVISION CYCLE PROTEIN 16 HOMOLOG: K
ANAPHASE-PROMOTING COMPLEX SUBUNIT 10: L
ANAPHASE-PROMOTING COMPLEX SUBUNIT 13: M
ANAPHASE-PROMOTING COMPLEX SUBUNIT 2: N
ANAPHASE-PROMOTING COMPLEX SUBUNIT 5: O
FIZZY-RELATED PROTEIN HOMOLOG: Q
F-BOX ONLY PROTEIN 5: R
PEPTIDE: S
PEPTIDE: T
ANAPHASE-PROMOTING COMPLEX SUBUNIT CDC26: U
ANAPHASE-PROMOTING COMPLEX SUBUNIT 7: VW

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

P
P

D
D

E
E

F
F

H
H

G
G

I
I

J
J

K
K

L
L

M
M

N
N

O
O

Q
R

R
S

S
T

T
U

U
W

V
X

W
Y

ANAPHASE-PROMOTING COMPLEX SUBUNIT 1

ANAPHASE-PROMOTING COMPLEX SUBUNIT 11

CELL DIVISION CYCLE PROTEIN 23 HOMOLOG

ANAPHASE-PROMOTING COMPLEX SUBUNIT 15

ANAPHASE-PROMOTING COMPLEX SUBUNIT 16

CELL DIVISION CYCLE PROTEIN 27 HOMOLOG

ANAPHASE-PROMOTING COMPLEX SUBUNIT CDC26

ANAPHASE-PROMOTING COMPLEX SUBUNIT 4

CELL DIVISION CYCLE PROTEIN 16 HOMOLOG

CELL DIVISION CYCLE PROTEIN 16 HOMOLOG

ANAPHASE-PROMOTING COMPLEX SUBUNIT 10

ANAPHASE-PROMOTING COMPLEX SUBUNIT 13

ANAPHASE-PROMOTING COMPLEX SUBUNIT 2

ANAPHASE-PROMOTING COMPLEX SUBUNIT 5

FIZZY-RELATED PROTEIN HOMOLOG

F-BOX ONLY PROTEIN 5

PEPTIDE

PEPTIDE

ANAPHASE-PROMOTING COMPLEX SUBUNIT CDC26

ANAPHASE-PROMOTING COMPLEX SUBUNIT 7

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