SMTL ID : 8tar.1

APC/C-CDH1-UBE2C-Ubiquitin-CyclinB-NTD

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-2-1-1-2-2-1-1-1-1-1-1-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-functional Binders)(Non-covalent)

ZN.1: 3 residues within 4Å: Chain C: C.26, C.34, H.56 No protein-ligand interaction detected (PLIP) ZN.2: 3 residues within 4Å: Chain C: C.33, C.34, C.44 No protein-ligand interaction detected (PLIP) ZN.3: 2 residues within 4Å: Chain C: C.51, S.52 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.51 ZN.4: 5 residues within 4Å: Chain L: A.222, C.224, C.231, W.232, C.233 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bodrug, T. et al., Time-resolved cryo-EM (TR-EM) analysis of substrate polyubiquitination by the RING E3 anaphase-promoting complex/cyclosome (APC/C). Nat.Struct.Mol.Biol. (2023)

Release Date

2023-09-27

Peptides

Anaphase-promoting complex subunit 1: A
G2/mitotic-specific cyclin-B1: B
Anaphase-promoting complex subunit 11: C
Anaphase-promoting complex subunit 15: D
Anaphase-promoting complex subunit CDC26: ET
Anaphase-promoting complex subunit 16: F
Anaphase-promoting complex subunit 4: G
Cell division cycle protein 27 homolog: HN
Cell division cycle protein 16 homolog: IQ
Anaphase-promoting complex subunit 10: J
Anaphase-promoting complex subunit 13: K
Anaphase-promoting complex subunit 2: L
Anaphase-promoting complex subunit 5: M
Ubiquitin-conjugating enzyme E2 C: O
Fizzy-related protein homolog: P
Cell division cycle protein 23 homolog: RS
Anaphase-promoting complex subunit 7: UV

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
G

T
W

F
H

G
I

H
J

N
P

I
K

Q
S

J
L

K
M

L
N

M
O

O
Q

P
R

R
U

S
V

U
Y

V
Z

Anaphase-promoting complex subunit 1

G2/mitotic-specific cyclin-B1

Anaphase-promoting complex subunit 11

Anaphase-promoting complex subunit 15

Anaphase-promoting complex subunit CDC26

Anaphase-promoting complex subunit 16

Anaphase-promoting complex subunit 4

Cell division cycle protein 27 homolog

Cell division cycle protein 16 homolog

Anaphase-promoting complex subunit 10

Anaphase-promoting complex subunit 13

Anaphase-promoting complex subunit 2

Anaphase-promoting complex subunit 5

Ubiquitin-conjugating enzyme E2 C

Fizzy-related protein homolog

Cell division cycle protein 23 homolog

Anaphase-promoting complex subunit 7

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