SMTL ID : 8tau.1

APC/C-CDH1-UBE2C-UBE2S-Ubiquitin-CyclinB

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-2-1-1-2-2-1-1-1-1-1-1-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain C: C.23, C.26, H.56 No protein-ligand interaction detected (PLIP) ZN.2: 3 residues within 4Å: Chain C: C.34, D.43, C.44 No protein-ligand interaction detected (PLIP) ZN.3: 1 residues within 4Å: Chain C: C.51 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.51 ZN.4: 4 residues within 4Å: Chain M: G.223, C.231, W.232, C.233 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bodrug, T. et al., Time-resolved cryo-EM (TR-EM) analysis of substrate polyubiquitination by the RING E3 anaphase-promoting complex/cyclosome (APC/C). Nat.Struct.Mol.Biol. (2023)

Release Date

2023-09-27

Peptides

Anaphase-promoting complex subunit 1: A
G2/mitotic-specific cyclin-B1: B
Anaphase-promoting complex subunit 11: C
Anaphase-promoting complex subunit 15: D
Ubiquitin-conjugating enzyme E2 S: E
Anaphase-promoting complex subunit CDC26: FU
Anaphase-promoting complex subunit 16: G
Anaphase-promoting complex subunit 4: H
Cell division cycle protein 27 homolog: IO
Cell division cycle protein 16 homolog: JR
Anaphase-promoting complex subunit 10: K
Anaphase-promoting complex subunit 13: L
Anaphase-promoting complex subunit 2: M
Anaphase-promoting complex subunit 5: N
Ubiquitin-conjugating enzyme E2 C: P
Fizzy-related protein homolog: Q
Cell division cycle protein 23 homolog: ST
Anaphase-promoting complex subunit 7: VW

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
G

U
W

G
H

H
I

I
J

O
P

J
K

R
S

K
L

L
M

M
N

N
O

P
Q

Q
R

S
U

T
V

V
Y

W
Z

Anaphase-promoting complex subunit 1

G2/mitotic-specific cyclin-B1

Anaphase-promoting complex subunit 11

Anaphase-promoting complex subunit 15

Ubiquitin-conjugating enzyme E2 S

Anaphase-promoting complex subunit CDC26

Anaphase-promoting complex subunit 16

Anaphase-promoting complex subunit 4

Cell division cycle protein 27 homolog

Cell division cycle protein 16 homolog

Anaphase-promoting complex subunit 10

Anaphase-promoting complex subunit 13

Anaphase-promoting complex subunit 2

Anaphase-promoting complex subunit 5

Ubiquitin-conjugating enzyme E2 C

Fizzy-related protein homolog

Cell division cycle protein 23 homolog

Anaphase-promoting complex subunit 7

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