SMTL ID : 4umx.1

IDH1 R132H in complex with cpd 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-dimer

Ligands

1 x VVS: 2,6-bis(1H-imidazol-1-ylmethyl)-4-(2,4,4-trimethylpentan-2-yl)phenol(Non-covalent)

VVS.1: 10 residues within 4Å: Chain A: W.124, I.130, M.254, A.258, W.267, D.279, V.281, A.282, M.291 Chain B: S.278 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.124, A:W.267, A:W.267, A:V.281, A:V.281 Water bridges: A:D.279, A:G.286

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 20 residues within 4Å: Chain A: K.72, A.74, T.75, I.76, T.77, R.82, N.96, Q.277, L.288, G.289, H.309, G.310, T.311, V.312, T.313, R.314, H.315, T.327, N.328, D.375 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:K.72, A:T.75, A:T.77, A:T.77, A:R.82, A:R.82, A:N.96, A:N.96, A:G.310, A:G.310, A:T.311, A:V.312, A:N.328, A:N.328 Water bridges: A:T.75, A:T.77, A:H.315, A:A.331 Salt bridges: A:R.314, A:H.315 pi-Stacking: A:H.309 NAP.3: 18 residues within 4Å: Chain B: K.72, A.74, T.75, I.76, T.77, R.82, N.96, L.288, G.289, H.309, G.310, T.311, V.312, T.313, R.314, H.315, T.327, N.328 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:T.75, B:T.77, B:T.77, B:T.77, B:R.82, B:R.82, B:N.96, B:G.310, B:G.310, B:T.311, B:V.312, B:N.328, B:N.328 Water bridges: B:K.72, B:T.313, B:H.315, B:A.331 Salt bridges: B:R.314, B:H.315 pi-Stacking: B:H.309

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain B: T.77, S.94, N.96, R.100 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.77, B:S.94, B:R.100, B:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, G. et al., Selective Inhibition of Mutant Isocitrate Dehydrogenase 1 (Idh1) Via Disruption of a Metal Binding Network by an Allosteric Small Molecule. J.Biol.Chem. (2015)

Release Date

2014-11-19

Peptides

ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC

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