SMTL ID : 4umy.1

IDH1 R132H in complex with cpd 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.77, S.94, N.96, R.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.77, A:S.94, A:N.96 Salt bridges: A:R.100 SO4.2: 6 residues within 4Å: Chain A: H.170, N.171, F.172, E.173, E.174 Chain B: Q.185 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.173, A:E.174, A:E.174, B:Q.185 Salt bridges: A:H.170 SO4.5: 6 residues within 4Å: Chain A: Q.185 Chain B: H.170, N.171, F.172, E.173, E.174 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.173, B:E.174, B:G.175, A:Q.185 Water bridges: B:E.173 Salt bridges: B:H.170 SO4.6: 5 residues within 4Å: Chain B: D.16, E.17, E.47, I.76, Y.316 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.16, B:E.17 Water bridges: B:Y.316

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: F.354, K.408, Q.411, A.412 No protein-ligand interaction detected (PLIP)

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.4: 19 residues within 4Å: Chain A: K.72, A.74, T.75, I.76, T.77, R.82, N.96, L.288, G.289, E.306, H.309, G.310, T.311, V.312, T.313, R.314, H.315, T.327, N.328 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:T.75, A:T.75, A:T.77, A:T.77, A:R.82, A:R.82, A:N.96, A:E.306, A:G.310, A:G.310, A:T.311, A:V.312, A:N.328, A:N.328 Water bridges: A:E.306, A:E.306, A:H.315, A:A.331 Salt bridges: A:R.314, A:H.315 pi-Stacking: A:H.309 NAP.7: 19 residues within 4Å: Chain B: K.72, A.74, T.75, I.76, T.77, R.82, N.96, L.288, G.289, E.306, H.309, G.310, T.311, V.312, T.313, R.314, H.315, T.327, N.328 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:T.75, B:T.77, B:T.77, B:T.77, B:R.82, B:R.82, B:N.96, B:E.306, B:G.310, B:G.310, B:T.311, B:V.312, B:N.328, B:N.328 Water bridges: B:E.306, B:E.306, B:R.314, B:A.331 Salt bridges: B:R.314, B:H.315 pi-Stacking: B:H.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, G. et al., Selective Inhibition of Mutant Isocitrate Dehydrogenase 1 (Idh1) Via Disruption of a Metal Binding Network by an Allosteric Small Molecule. J.Biol.Chem. (2015)

Release Date

2014-11-19

Peptides

ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC

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