SMTL ID : 4v3l.1

RNF38-UB-UbcH5B-Ub complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-1-2-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: R.71, N.78, S.79, I.122, W.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.71, A:N.78 EDO.2: 3 residues within 4Å: Chain A: I.83, K.84, L.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.83 Water bridges: A:S.82, A:S.82

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain C: C.27, C.30, H.50, C.53 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.27, C:C.30, C:H.50, C:C.53 ZN.4: 4 residues within 4Å: Chain C: C.45, H.47, C.64, C.67 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.45, C:H.47, C:C.64, C:C.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buetow, L. et al., Activation of a Primed Ring E3-E2-Ubiquitin Complex by Non-Covalent Ubiquitin. Mol.Cell (2015)

Release Date

2015-04-08

Peptides

UBIQUITIN-CONJUGATING ENZYME E2 D2: A
POLYUBIQUITIN-C: BD
E3 UBIQUITIN-PROTEIN LIGASE RNF38: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

C
C

UBIQUITIN-CONJUGATING ENZYME E2 D2

POLYUBIQUITIN-C

E3 UBIQUITIN-PROTEIN LIGASE RNF38

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