SMTL ID : 4w5n.1

The Crystal Structure of Human Argonaute2 Bound to a Defined Guide RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

3 x IPH: PHENOL(Non-covalent)

IPH.1: 8 residues within 4Å: Chain A: F.587, Q.589, P.590, V.591, D.619, A.620, F.653, F.659 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.591, A:A.620, A:F.653, A:F.659 IPH.2: 6 residues within 4Å: Chain A: L.650, I.651, K.660, L.694, E.695, Y.698 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.650, A:I.651, A:K.660, A:K.660, A:L.694 pi-Stacking: A:Y.698 IPH.3: 6 residues within 4Å: Chain A: Y.174, T.183, F.200, G.201, F.202, L.382 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.382 Hydrogen bonds: A:T.183

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: D.597, V.598, E.637, D.669 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.597, A:V.598

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schirle, N.T. et al., Gene regulation. Structural basis for microRNA targeting. Science (2014)

Release Date

2014-11-12

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute-2

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