SMTL ID : 4z4g.1

Human Argonaute2 Bound to t1-Inosine Target RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: D.597, V.598, D.669 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.597, A:V.598, H2O.1, H2O.1, H2O.2, H2O.4 MG.6: 2 residues within 4Å: Chain B: C.12, A.13 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain C: U.4 No protein-ligand interaction detected (PLIP)

4 x IPH: PHENOL(Non-covalent)

IPH.2: 8 residues within 4Å: Chain A: R.688, C.691, I.692, Y.698, Q.699, P.700, I.702, D.771 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.688, A:R.688, A:R.688, A:I.692, A:Q.699, A:I.702 Hydrogen bonds: A:D.771 IPH.3: 6 residues within 4Å: Chain A: L.650, Y.654, K.660, P.661, E.695, Y.698 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.650, A:Y.654, A:K.660, A:K.660, A:K.660 pi-Stacking: A:Y.698 IPH.4: 7 residues within 4Å: Chain A: F.587, Q.589, P.590, V.591, A.620, F.653, F.659 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.620, A:F.653, A:F.659 Hydrogen bonds: A:F.587 IPH.5: 8 residues within 4Å: Chain A: D.537, G.541, M.542, A.543, K.570, T.852, T.855, Y.857 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.543, A:T.852, A:T.855, A:Y.857

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schirle, N.T. et al., Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets. Elife (2015)

Release Date

2015-09-23

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute-2

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