SMTL ID : 5ki6.1

Human Argonaute-2 bound to a guide RNA with a nucleobase modification at position 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

3 x IPH: PHENOL(Non-covalent)

IPH.1: 5 residues within 4Å: Chain A: L.650, Y.654, K.660, L.694, Y.698 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.650, A:Y.654, A:K.660, A:K.660, A:L.694, A:L.694 Water bridges: A:K.660 pi-Stacking: A:Y.698 IPH.2: 7 residues within 4Å: Chain A: F.587, Q.589, P.590, V.591, A.620, F.653, F.659 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.591, A:A.620, A:F.653, A:F.659 IPH.3: 6 residues within 4Å: Chain A: R.688, C.691, Y.698, Q.699, P.700, I.702 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.688, A:Q.699, A:I.702

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suter, S.R. et al., Structure-Guided Control of siRNA Off-Target Effects. J.Am.Chem.Soc. (2016)

Release Date

2016-07-20

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute-2

Related Entries With Identical Sequence