SMTL ID : 5js1.1

Human Argonaute2 Bound to an siRNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x IPH: PHENOL(Non-covalent)

IPH.1: 6 residues within 4Å: Chain A: L.650, Y.654, K.660, L.694, E.695, Y.698 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.654, A:K.660, A:K.660, A:L.694, A:L.694 pi-Stacking: A:Y.698 IPH.2: 7 residues within 4Å: Chain A: F.587, Q.589, P.590, V.591, D.619, A.620, F.653 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.591, A:A.620, A:F.653

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.597, V.598, D.669 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.597, A:D.669, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schirle, N.T. et al., Structural Analysis of Human Argonaute-2 Bound to a Modified siRNA Guide. J.Am.Chem.Soc. (2016)

Release Date

2016-07-20

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute-2

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