SMTL ID : 4z4f.1

Human Argonaute2 Bound to t1-DAP Target RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 4 residues within 4Å: Chain A: D.597, V.598, D.669 Chain B: C.10 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.597, A:V.598, H2O.1, H2O.1, H2O.1 MG.5: 3 residues within 4Å: Chain B: A.13, A.14, G.15 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain C: U.4 No protein-ligand interaction detected (PLIP)

3 x IPH: PHENOL(Non-covalent)

IPH.2: 7 residues within 4Å: Chain A: L.650, Y.654, K.660, P.661, L.694, E.695, Y.698 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.654, A:K.660, A:K.660, A:L.694, A:E.695 Hydrogen bonds: A:L.650 pi-Stacking: A:Y.698 IPH.3: 8 residues within 4Å: Chain A: F.587, Q.589, P.590, V.591, A.620, F.653, T.657, F.659 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.591, A:A.620, A:F.659 IPH.4: 8 residues within 4Å: Chain A: D.537, M.542, A.543, T.544, K.570, T.852, T.855, Y.857 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.543, A:T.852, A:T.855, A:Y.857 Hydrogen bonds: A:T.544, A:T.544

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schirle, N.T. et al., Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets. Elife (2015)

Release Date

2015-09-23

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute-2

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