SMTL ID : 4wrh.1

AKR1C3 complexed with breakdown product of N-(tert-butyl)-2-(2-chloro-4-(((3-mercapto-5-methyl-4H-1,2,4-triazol-4-yl)amino)methyl)-6-methoxyphenoxy)acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280, F.306 Ligands: YY1.3 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:F.306 Hydrogen bonds: A:T.23, A:Y.24, A:D.50, A:D.50, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:S.221, A:Q.222, A:Q.222, A:Q.222, A:K.270, A:S.271, A:Y.272, A:Q.279, A:N.280 Water bridges: A:S.217, A:A.218, A:A.218, A:R.276, A:Q.279 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

1 x YY2: 2-[4-(aminomethyl)-2-chloro-6-methoxyphenoxy]-N-tert-butylacetamide(Non-covalent)

YY2.2: 13 residues within 4Å: Chain A: W.86, S.118, M.120, L.122, S.129, V.137, N.167, Y.216, W.227, F.306, F.311, P.318 Ligands: YY1.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.306, A:F.311, A:F.311, A:F.311, A:P.318 Water bridges: A:S.118 pi-Stacking: A:W.86

1 x YY1: 5-methyl-4H-1,2,4-triazole-3-thiol(Non-covalent)

YY1.3: 6 residues within 4Å: Chain A: Y.24, L.54, Y.55, H.117 Ligands: NAP.1, YY2.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.54 Hydrogen bonds: A:Y.55

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 9 residues within 4Å: Chain A: Q.6, P.17, V.18, L.19, G.45, F.46, R.47, H.48, F.284 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.6, A:V.18, A:L.19, A:R.47, A:H.48 EDO.5: 2 residues within 4Å: Chain A: F.197, R.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.199 Water bridges: A:R.199, A:R.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yosaatmadja, Y. et al., Breakdown product of N-(tert-butyl)-2-(2-chloro-4-(((3-mercapto-5-methyl-4H-1,2,4-triazol-4-yl)amino)methyl)-6-methoxyphenoxy)acetamide trapped in active site of AKR1C3. To Be Published

Release Date

2014-11-05

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C3

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