SMTL ID : 4ww8.1 (1 other biounit)

Crystal structure of human carbonic anhydrase isozyme XII with 4-Propylthiobenzenesulfonamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.91, H.93, E.104, H.117, T.198 Ligands: VD9.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.117 ZN.6: 5 residues within 4Å: Chain B: H.91, H.93, E.104, H.117 Ligands: VD9.13 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.91, B:H.93, B:H.117

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: N.64, H.66, S.67, Q.89, H.91 Ligands: VD9.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.64, A:Q.89 Water bridges: A:H.66 EDO.3: 5 residues within 4Å: Chain A: D.156, F.159, S.160, Q.221, A.224 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: N.71, L.72, T.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.71, A:L.72 EDO.7: 7 residues within 4Å: Chain B: N.64, H.66, S.67, Q.89, H.91 Ligands: EDO.10, VD9.13 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.64, B:Q.89 Water bridges: B:H.66, B:T.199 EDO.8: 8 residues within 4Å: Chain B: S.42, L.43, T.44, L.46, G.80, L.81, Y.190, R.192 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.192, B:R.192 EDO.9: 5 residues within 4Å: Chain B: D.156, F.159, S.160, Q.221, A.224 No protein-ligand interaction detected (PLIP) EDO.10: 5 residues within 4Å: Chain B: N.64, K.69, Q.89 Ligands: EDO.7, VD9.13 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.64, B:Q.89 Water bridges: B:K.69 EDO.11: 4 residues within 4Å: Chain B: L.183, P.184, E.185, V.215 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.181 Water bridges: B:E.185, B:P.214 EDO.12: 4 residues within 4Å: Chain B: R.194, R.255, L.256, Y.258 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.256, B:Y.258, B:Y.258 Water bridges: B:R.194, B:R.194

2 x VD9: 4-(propylsulfanyl)benzenesulfonamide(Non-covalent)

VD9.5: 13 residues within 4Å: Chain A: H.91, H.93, E.104, H.117, V.119, A.129, V.141, L.197, T.198, T.199, W.208 Ligands: ZN.1, EDO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.119, A:A.129, A:L.197, A:L.197 Hydrogen bonds: A:T.198, A:T.198 VD9.13: 13 residues within 4Å: Chain B: H.91, H.93, H.117, V.119, A.129, V.141, L.197, T.198, T.199, W.208 Ligands: ZN.6, EDO.7, EDO.10 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.119, B:A.129, B:L.197, B:L.197 Hydrogen bonds: B:T.198, B:T.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zubriene, A. et al., Intrinsic thermodynamics of 4-substituted-2,3,5,6-tetrafluorobenzenesulfonamide binding to carbonic anhydrases by isothermal titration calorimetry. Biophys.Chem. (2015)

Release Date

2015-07-01

Peptides

Carbonic anhydrase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carbonic anhydrase 12

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