SMTL ID : 4ww8.2 (1 other biounit)

Crystal structure of human carbonic anhydrase isozyme XII with 4-Propylthiobenzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.91, H.93, E.104, H.117, T.198 Ligands: VD9.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.117 ZN.5: 5 residues within 4Å: Chain B: H.91, H.93, E.104, H.117 Ligands: VD9.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.91, B:H.93, B:H.117

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: N.64, H.66, S.67, Q.89, H.91 Ligands: VD9.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.64, A:Q.89 Water bridges: A:H.66 EDO.3: 3 residues within 4Å: Chain A: N.71, L.72, T.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.71, A:L.72 EDO.6: 7 residues within 4Å: Chain B: N.64, H.66, S.67, Q.89, H.91, T.199 Ligands: VD9.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.64, B:Q.89 Water bridges: B:H.66, B:T.199 EDO.7: 7 residues within 4Å: Chain B: S.42, T.44, L.46, G.80, L.81, Y.190, R.192 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.192, B:R.192 Water bridges: B:S.42

2 x VD9: 4-(propylsulfanyl)benzenesulfonamide(Non-covalent)

VD9.4: 14 residues within 4Å: Chain A: H.91, H.93, E.104, H.117, V.119, A.129, S.133, V.141, L.197, T.198, T.199, W.208 Ligands: ZN.1, EDO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.119, A:A.129, A:L.197, A:L.197 Hydrogen bonds: A:T.198, A:T.198 VD9.8: 13 residues within 4Å: Chain B: H.91, H.93, H.117, V.119, A.129, S.133, V.141, L.197, T.198, T.199, W.208 Ligands: ZN.5, EDO.6 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.119, B:A.129, B:L.197, B:L.197 Hydrogen bonds: B:T.198, B:T.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zubriene, A. et al., Intrinsic thermodynamics of 4-substituted-2,3,5,6-tetrafluorobenzenesulfonamide binding to carbonic anhydrases by isothermal titration calorimetry. Biophys.Chem. (2015)

Release Date

2015-07-01

Peptides

Carbonic anhydrase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Carbonic anhydrase 12

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