SMTL ID : 6t5p.2 (1 other biounit)

Human Carbonic anhydrase XII bound by 3,5-Di-tert-butylbenzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.91, H.93, E.104, H.117 Ligands: VD8.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.117 ZN.6: 5 residues within 4Å: Chain B: H.91, H.93, E.104, H.117 Ligands: VD8.7 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.91, B:H.93, B:H.117

2 x VD8: 3,5-di~{tert}-butylbenzenesulfonamide(Non-covalent)

VD8.2: 14 residues within 4Å: Chain A: W.4, N.64, H.66, S.67, Q.89, H.91, H.93, E.104, H.117, V.119, L.197, T.198, T.199 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.4, A:H.66, A:V.119, A:L.197, A:L.197 Hydrogen bonds: A:T.198, A:T.198, A:T.199 VD8.7: 12 residues within 4Å: Chain B: N.64, S.67, Q.89, H.91, H.93, E.104, H.117, V.119, L.197, T.198, T.199 Ligands: ZN.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.198, B:T.198

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: W.4, Y.19, P.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.19, A:P.200 EDO.4: 7 residues within 4Å: Chain A: S.42, T.44, L.46, G.80, L.81, Y.190, R.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.190, A:R.192, A:R.192 Water bridges: A:S.42 EDO.5: 6 residues within 4Å: Chain A: K.166, T.227, A.228, L.229, Y.230, E.241 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.166, A:K.166 Water bridges: A:M.242 EDO.8: 8 residues within 4Å: Chain B: S.42, L.43, T.44, L.46, G.80, L.81, Y.190, R.192 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.192, B:R.192 Water bridges: B:S.42 EDO.9: 4 residues within 4Å: Chain B: D.156, F.159, S.160, Q.221 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dudutiene, V. et al., Isoform-Selective Enzyme Inhibitors by Exploring Pocket Size According to the Lock-and-Key Principle. Biophys.J. (2020)

Release Date

2020-10-14

Peptides

Carbonic anhydrase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Carbonic anhydrase 12

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