SMTL ID : 5msa.1 (1 other biounit)

Crystal structure of human carbonic anhydrase isozyme XII with 2,3,5,6-Tetrafluoro-4-(propylthio)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.91, H.93, E.104, H.117, T.198 Ligands: 3TV.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.117 ZN.11: 6 residues within 4Å: Chain B: H.91, H.93, E.104, H.117, T.198 Ligands: 3TV.12 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.91, B:H.93, B:H.117

2 x 3TV: 2,3,5,6-tetrafluoro-4-(propylsulfanyl)benzenesulfonamide(Non-covalent)

3TV.2: 14 residues within 4Å: Chain A: Q.89, H.91, H.93, E.104, H.117, V.119, A.129, L.139, V.141, L.197, T.198, T.199, W.208 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.129 Hydrogen bonds: A:T.198, A:T.198 3TV.12: 16 residues within 4Å: Chain B: Q.89, H.91, H.93, E.104, H.117, V.119, A.129, S.133, V.141, L.197, T.198, T.199, P.200, W.208 Ligands: ZN.11, CIT.15 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.198, B:T.198 Halogen bonds: B:P.200

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: N.71, L.72, T.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.72 Water bridges: A:T.88 EDO.4: 5 residues within 4Å: Chain A: T.62, N.63, N.64, G.169, E.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.63, A:G.169 EDO.5: 5 residues within 4Å: Chain A: D.156, F.159, S.160, Q.221, A.224 No protein-ligand interaction detected (PLIP) EDO.7: 6 residues within 4Å: Chain A: D.31, H.33, S.108, G.109 Chain B: G.109, H.111 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.109, B:H.111 EDO.8: 3 residues within 4Å: Chain A: Y.39, A.41, S.260 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.41 Water bridges: A:L.43 EDO.9: 6 residues within 4Å: Chain A: L.53, S.54, K.57, F.59, P.73, D.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.54, A:D.75 EDO.10: 4 residues within 4Å: Chain A: L.223, A.224, T.227, A.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.227, A:T.227 EDO.13: 8 residues within 4Å: Chain B: S.42, L.43, T.44, L.46, G.80, L.81, Y.190, R.192 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.192, B:R.192

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 2 residues within 4Å: Chain A: S.150, F.151 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.151 PEG.14: 2 residues within 4Å: Chain B: F.151, P.153 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.151

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.15: 4 residues within 4Å: Chain B: N.64, K.69, Q.89 Ligands: 3TV.12 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:N.64 Hydrogen bonds: B:N.64, B:K.69, B:K.69, B:Q.89 Water bridges: B:T.199 Salt bridges: B:K.69, B:K.69, B:K.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smirnov, A. et al., Crystal structure of human carbonic anhydraseisozyme XII with 2,3,5,6-Tetrafluoro-4-(propylthio)benzenesulfonamide. To be published

Release Date

2018-01-17

Peptides

Carbonic anhydrase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carbonic anhydrase 12

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