SMTL ID : 5msa.2 (1 other biounit)

Crystal structure of human carbonic anhydrase isozyme XII with 2,3,5,6-Tetrafluoro-4-(propylthio)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.91, H.93, E.104, H.117, T.198 Ligands: 3TV.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.117 ZN.6: 6 residues within 4Å: Chain B: H.91, H.93, E.104, H.117, T.198 Ligands: 3TV.7 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.91, B:H.93, B:H.117

2 x 3TV: 2,3,5,6-tetrafluoro-4-(propylsulfanyl)benzenesulfonamide(Non-covalent)

3TV.2: 15 residues within 4Å: Chain A: Q.89, H.91, H.93, E.104, H.117, V.119, A.129, S.133, L.139, V.141, L.197, T.198, T.199, W.208 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.119, A:A.129 Hydrogen bonds: A:T.198, A:T.198 3TV.7: 13 residues within 4Å: Chain B: H.91, H.93, E.104, H.117, V.119, L.139, V.141, L.197, T.198, T.199, W.208 Ligands: ZN.6, CIT.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.198, B:T.198

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: N.71, L.72, T.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.72 EDO.5: 4 residues within 4Å: Chain A: E.220, L.223, A.224, T.227 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.220 EDO.10: 2 residues within 4Å: Chain B: D.235, P.237 No protein-ligand interaction detected (PLIP) EDO.12: 3 residues within 4Å: Chain B: H.164, A.172, F.173 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.164, B:F.173

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain A: K.17, K.18, P.20 No protein-ligand interaction detected (PLIP) PEG.8: 4 residues within 4Å: Chain B: T.62, K.168, G.169, H.233 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.171, B:E.171

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.9: 6 residues within 4Å: Chain B: Y.19, S.130, S.133, N.134, P.201, N.203 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:N.134, B:P.201 Hydrogen bonds: B:S.133, B:N.203, B:N.203, B:N.203 Water bridges: B:S.21 CIT.11: 4 residues within 4Å: Chain B: N.64, K.69, Q.89 Ligands: 3TV.7 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:N.64 Hydrogen bonds: B:N.64, B:K.69, B:K.69, B:Q.89 Water bridges: B:K.69, B:T.199 Salt bridges: B:K.69, B:K.69, B:K.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smirnov, A. et al., Crystal structure of human carbonic anhydraseisozyme XII with 2,3,5,6-Tetrafluoro-4-(propylthio)benzenesulfonamide. To be published

Release Date

2018-01-17

Peptides

Carbonic anhydrase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Carbonic anhydrase 12

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