SMTL ID : 4xp5.1

X-ray structure of Drosophila dopamine transporter bound to cocaine analogue-RTI55

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 7 residues within 4Å: Chain A: R.109, F.112, A.113, P.120, Y.150, Y.154, D.173 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.154

1 x 42F: methyl (1R,2S,3S,5S)-3-(4-iodophenyl)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate(Non-covalent)

42F.2: 16 residues within 4Å: Chain A: F.19, D.22, A.93, V.96, D.97, Y.99, Y.100, F.254, S.255, L.256, G.257, F.260, S.356, G.360, A.414 Ligands: NA.6 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.19, A:F.260, A:F.260 Salt bridges: A:D.22 pi-Stacking: A:Y.100, A:F.260

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 6 residues within 4Å: Chain A: L.49, A.50, I.54, Y.277, Y.453, W.454 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.49, A:I.54, A:Y.453, A:Y.453, A:W.454, A:W.454 CLR.5: 8 residues within 4Å: Chain A: V.10, L.13, L.14, L.205, Y.208, L.212, I.286, I.293 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.13, A:L.205, A:Y.208, A:Y.208, A:L.212, A:I.286, A:I.286, A:I.293

1 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-covalent)

P4G.4: 11 residues within 4Å: Chain A: V.246, T.250, F.254, D.410, R.411, A.414, G.415, Y.416, L.419, I.469, G.473 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.411

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 6 residues within 4Å: Chain A: A.20, D.22, N.25, S.255, N.287 Ligands: 42F.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.22, A:N.25, A:N.25 NA.8: 5 residues within 4Å: Chain A: G.18, V.21, L.352, D.355, S.356 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.21, A:S.356

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 4 residues within 4Å: Chain A: Y.45, Q.251, S.255, S.291 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K.H. et al., Neurotransmitter and psychostimulant recognition by the dopamine transporter. Nature (2015)

Release Date

2015-05-06

Peptides

Dopamine transporter, isoform B: A
Antibody fragment heavy chain-protein, 9D5-heavy chain: B
Ighg protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Dopamine transporter, isoform B

Antibody fragment heavy chain-protein, 9D5-heavy chain

Ighg protein

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