SMTL ID : 6m0f.1

X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) in substrate-free form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: F.29, Y.45, Q.251, S.255, S.291 Ligand excluded by PLIP

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 6 residues within 4Å: Chain A: L.49, A.50, Y.277, S.288, A.289, W.454 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.49, A:A.50, A:W.454, A:W.454 CLR.3: 8 residues within 4Å: Chain A: L.13, L.14, I.17, L.205, Y.208, L.212, I.286, I.293 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.13, A:L.14, A:I.17, A:L.205, A:Y.208, A:L.212, A:L.212, A:I.286, A:I.293

1 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-covalent)

P4G.4: 3 residues within 4Å: Chain A: R.411, G.415, G.473 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.411

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain A: A.20, D.22, N.25, F.254, S.255, N.287 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.20, A:D.22 NA.6: 5 residues within 4Å: Chain A: G.18, V.21, T.351, L.352, D.355 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pidathala, S. et al., Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters. Nat Commun (2021)

Release Date

2021-02-17

Peptides

Sodium-dependent dopamine transporter: A
Antibody fragment (9D5) Light chain: B
Antibody fragment (9D5) heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent dopamine transporter

Antibody fragment (9D5) Light chain

Antibody fragment (9D5) heavy chain

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