SMTL ID : 4xph.1

X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) bound to 3,4dichlorophenethylamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x BGC- GLC: alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GLC.1: 6 residues within 4Å: Chain A: R.109, F.112, A.113, P.120, Y.154, D.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.109, A:R.109, A:Y.154 Salt bridges: A:R.109

1 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-functional Binders)

P4G.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x 42J: 2-(3,4-dichlorophenyl)ethanamine(Non-covalent)

42J.3: 12 residues within 4Å: Chain A: F.19, A.20, D.22, A.93, V.96, Y.100, F.254, S.255, F.260, S.356, S.357, G.360 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.19, A:F.260 Hydrogen bonds: A:A.20, A:D.22 pi-Stacking: A:Y.100, A:F.260

3 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: A.20, D.22, N.25, S.255, N.287 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.20, A:D.22, A:D.22, A:N.25, A:N.287 NA.5: 6 residues within 4Å: Chain A: G.18, V.21, D.22, L.352, D.355, S.356 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.352, A:S.356 NA.9: 6 residues within 4Å: Chain B: Q.6, S.7, M.21, T.22, W.36, T.103 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.6, B:S.7, B:T.22

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: Y.45, Q.251, S.255, S.291 Ligand excluded by PLIP

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.7: 5 residues within 4Å: Chain A: L.49, A.50, I.54, Y.453, W.454 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.49, A:A.50, A:I.54, A:W.454, A:W.454 CLR.8: 7 residues within 4Å: Chain A: V.10, L.13, L.14, L.205, Y.208, L.212, I.286 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.10, A:L.13, A:L.14, A:L.205, A:Y.208, A:L.212, A:I.286, A:I.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K.H. et al., Neurotransmitter and psychostimulant recognition by the dopamine transporter. Nature (2015)

Release Date

2015-05-06

Peptides

Transporter: A
Antibody fragment light chain: B
Antibody fragment heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Transporter

Antibody fragment light chain

Antibody fragment heavy chain

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