SMTL ID : 4xp9.1

X-ray structure of Drosophila dopamine transporter bound to psychostimulant D-amphetamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 5 residues within 4Å: Chain A: R.109, A.113, P.120, Y.154, D.173 No protein-ligand interaction detected (PLIP)

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.2: 8 residues within 4Å: Chain A: I.54, Y.277, F.285, A.289, P.450, G.451, Y.453, W.454 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.54, A:F.285, A:Y.453, A:W.454 Hydrogen bonds: A:G.451

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: F.115, T.116, N.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.116, A:T.116, A:N.117, A:N.117

1 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.4: 2 residues within 4Å: Chain A: E.157, W.172 No protein-ligand interaction detected (PLIP)

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.5: 6 residues within 4Å: Chain A: V.10, L.13, I.17, L.205, Y.208, I.286 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.13, A:I.17, A:L.205, A:I.286

1 x 1WE: (2S)-1-phenylpropan-2-amine(Non-covalent)

1WE.6: 11 residues within 4Å: Chain A: F.19, A.20, D.22, Y.100, F.254, S.255, L.256, G.257, F.260, S.356 Ligands: NA.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.19, A:Y.100, A:F.260, A:F.260 Hydrogen bonds: A:A.20 pi-Stacking: A:F.19

2 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-covalent)

P4G.7: 4 residues within 4Å: Chain A: M.505, A.508, V.509, F.512 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.512 P4G.8: 2 residues within 4Å: Chain A: H.165, W.490 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.9: 5 residues within 4Å: Chain A: A.20, N.25, S.255, N.287 Ligands: 1WE.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.20, A:N.25, A:N.287 NA.10: 6 residues within 4Å: Chain A: G.18, V.21, D.22, L.352, D.355, S.356 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.355, A:S.356, A:S.356

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 4 residues within 4Å: Chain A: Y.45, Q.251, S.255, S.291 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K.H. et al., Neurotransmitter and psychostimulant recognition by the dopamine transporter. Nature (2015)

Release Date

2015-05-06

Peptides

Transporter: A
ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN: B
ANTIBODY FRAGMENT LIGHT CHAIN-PROTEIN, 9D5-LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Transporter

ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN

ANTIBODY FRAGMENT LIGHT CHAIN-PROTEIN, 9D5-LIGHT CHAIN

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