SMTL ID : 4xp6.1

X-ray structure of Drosophila dopamine transporter bound to psychostimulant methamphetamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 4 residues within 4Å: Chain A: R.109, A.113, T.116, Y.154 No protein-ligand interaction detected (PLIP)

1 x B40: (2S)-N-methyl-1-phenylpropan-2-amine(Non-covalent)

B40.2: 9 residues within 4Å: Chain A: F.19, D.22, V.96, D.97, F.254, S.255, F.260, S.356, G.360 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.19, A:V.96, A:F.260, A:F.260 Hydrogen bonds: A:F.254 pi-Stacking: A:Y.100

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: A.20, D.22, N.25, S.255, N.287 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.20, A:N.25, A:N.287 NA.4: 5 residues within 4Å: Chain A: G.18, V.21, L.352, D.355, S.356 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.355, A:D.355, A:S.356

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: F.29, Y.45, Q.251, S.255, S.291 Ligand excluded by PLIP

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 3 residues within 4Å: Chain A: F.115, T.116, N.117 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.117

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.7: 8 residues within 4Å: Chain A: V.10, L.13, L.14, L.205, Y.208, L.212, I.286, I.293 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.10, A:L.13, A:L.14, A:Y.208, A:Y.208, A:L.212, A:I.286, A:I.293

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.8: 8 residues within 4Å: Chain A: A.50, I.54, Y.277, F.285, S.288, F.292, Y.453, W.454 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.285, A:F.292, A:Y.453, A:W.454 Hydrogen bonds: A:Y.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K.H. et al., Neurotransmitter and psychostimulant recognition by the dopamine transporter. Nature (2015)

Release Date

2015-05-13

Peptides

Transporter: A
Antibody fragment heavy chain-protein, 9D5-heavy chain: B
Antibody fragment light chain-protein, 9D5-light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Transporter

Antibody fragment heavy chain-protein, 9D5-heavy chain

Antibody fragment light chain-protein, 9D5-light chain

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