- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 1 x BGC- XYS- XYS: alpha-D-xylopyranose-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranose
- 9 x CA: CALCIUM ION(Non-covalent)
- 1 x FUC: alpha-L-fucopyranose(Post Translational Modification)
- 22 x TMA: TETRAMETHYLAMMONIUM ION(Non-covalent)(Non-functional Binders)
TMA.11: 6 residues within 4Å:- Chain A: E.7, L.8, R.9, P.10, G.11, K.32
Ligand excluded by PLIPTMA.14: 5 residues within 4Å:- Chain B: V.55, H.64, E.68, Q.69, S.70
Ligand excluded by PLIPTMA.15: 4 residues within 4Å:- Chain B: L.61, S.62, E.63, H.64
Ligand excluded by PLIPTMA.16: 3 residues within 4Å:- Chain B: S.176, V.214, G.215
Ligand excluded by PLIPTMA.17: 4 residues within 4Å:- Chain B: F.126, N.149, Y.175
- Ligands: TMA.21
Ligand excluded by PLIPTMA.18: 4 residues within 4Å:- Chain B: I.53, S.70, R.71, R.72
Ligand excluded by PLIPTMA.19: 6 residues within 4Å:- Chain B: T.87, K.165, W.207, Q.209
- Ligands: 0Z7.12, TMA.23
Ligand excluded by PLIPTMA.21: 5 residues within 4Å:- Chain B: F.126, N.149, H.194, W.199
- Ligands: TMA.17
Ligand excluded by PLIPTMA.22: 5 residues within 4Å:- Chain B: Q.156, D.157
- Chain C: Y.94, E.95, N.96
Ligand excluded by PLIPTMA.23: 5 residues within 4Å:- Chain B: G.85, T.86, T.87
- Ligands: 0Z7.12, TMA.19
Ligand excluded by PLIPTMA.24: 4 residues within 4Å:- Chain C: T.172, E.174, F.175, L.176
Ligand excluded by PLIPTMA.25: 10 residues within 4Å:- Chain A: V.92
- Chain B: R.119, F.123
- Chain C: T.35, Q.37, S.47, Y.51, F.76, Y.78, P.92
Ligand excluded by PLIPTMA.26: 7 residues within 4Å:- Chain C: K.68, Y.103, V.146, F.147, G.148, K.149, D.150
Ligand excluded by PLIPTMA.27: 3 residues within 4Å:- Chain C: Q.114, S.115, T.126
Ligand excluded by PLIPTMA.28: 7 residues within 4Å:- Chain A: K.62, D.63, Q.64
- Chain C: Q.110, P.111, T.112, P.206
Ligand excluded by PLIPTMA.29: 11 residues within 4Å:- Chain A: S.67, Y.68, I.69, R.79
- Chain C: K.15, S.16, T.17, K.20, T.21, I.22
- Ligands: BGC-XYS-XYS.1
Ligand excluded by PLIPTMA.30: 7 residues within 4Å:- Chain A: L.13, I.30, F.31
- Chain C: S.160, N.184, C.186, C.209
Ligand excluded by PLIPTMA.31: 5 residues within 4Å:- Chain C: L.72, N.96, S.97, P.98, E.99
Ligand excluded by PLIPTMA.32: 6 residues within 4Å:- Chain A: L.39
- Chain C: Y.156, K.165, S.188, Q.190, D.204
Ligand excluded by PLIPTMA.33: 6 residues within 4Å:- Chain B: R.125, F.126, P.151, Y.175
- Chain C: K.41, S.42
Ligand excluded by PLIPTMA.34: 4 residues within 4Å:- Chain C: N.11, L.12, T.13, P.98
Ligand excluded by PLIPTMA.35: 3 residues within 4Å:- Chain C: T.52, T.53, D.54
Ligand excluded by PLIP- 1 x 0Z7: N-acetyl-D-phenylalanyl-N-[(2S,3S)-6-carbamimidamido-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide(Covalent)
0Z7.12: 28 residues within 4Å:- Chain B: C.26, H.41, C.42, D.44, Y.82, G.85, T.86, T.87, D.90, D.181, S.182, C.183, K.184, G.185, D.186, S.187, V.205, S.206, W.207, G.208, Q.209, G.210, C.211, A.212, G.218, V.219
- Ligands: TMA.19, TMA.23
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:H.41, B:T.87, B:V.205
- Hydrogen bonds: B:S.182, B:S.182, B:K.184, B:G.185, B:S.187, B:S.206, B:G.208, B:G.208, B:G.210, B:G.210, B:G.210
- Water bridges: B:W.207, B:Q.209
- Salt bridges: B:D.181
- 1 x POL: N-PROPANOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sorensen, A.B. et al., Molecular Basis of Enhanced Activity in Factor VIIa-Trypsin Variants Conveys Insights into Tissue Factor-mediated Allosteric Regulation of Factor VIIa Activity. J.Biol.Chem. (2016)
- Release Date
- 2015-12-30
- Peptides
- Coagulation factor VII: A
Coagulation factor VII: B
Tissue factor: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
HC
T
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 1 x BGC- XYS- XYS: alpha-D-xylopyranose-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranose
- 9 x CA: CALCIUM ION(Non-covalent)
- 1 x FUC: alpha-L-fucopyranose(Post Translational Modification)
- 22 x TMA: TETRAMETHYLAMMONIUM ION(Non-covalent)(Non-functional Binders)
- 1 x 0Z7: N-acetyl-D-phenylalanyl-N-[(2S,3S)-6-carbamimidamido-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide(Covalent)
- 1 x POL: N-PROPANOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sorensen, A.B. et al., Molecular Basis of Enhanced Activity in Factor VIIa-Trypsin Variants Conveys Insights into Tissue Factor-mediated Allosteric Regulation of Factor VIIa Activity. J.Biol.Chem. (2016)
- Release Date
- 2015-12-30
- Peptides
- Coagulation factor VII: A
Coagulation factor VII: B
Tissue factor: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
HC
T