SMTL ID : 8cn9.4 (3 other biounits)

Factor VII binding Fab of the bispecific antibody HMB-001 in complex with Factor VII

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x CS: CESIUM ION(Non-covalent)

CS.1: 4 residues within 4Å: Chain A: A.112, S.114, N.137, N.138 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain C: E.58, H.59, D.60, E.63, D.65, E.68 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.58, C:E.63, C:D.65, C:E.68 CA.3: 4 residues within 4Å: Chain C: D.186, S.187, G.213, G.223 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.186, C:S.187, C:S.187

1 x BGC: beta-D-glucopyranose(Post Translational Modification)

BGC.4: 5 residues within 4Å: Chain D: C.5, S.7, P.9, Q.21, Y.23 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:P.9 Hydrogen bonds: D:S.7, D:Q.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gandhi, P.S. et al., A bispecific antibody approach for the potential prophylactic treatment of inherited bleeding disorders. Nat Cardiovasc Res (2024)

Release Date

2023-12-27

Peptides

Fab light chain: A
Fab heavy chain: B
Coagulation factor VII: C
Coagulation factor VII: D
Tissue factor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
Q

C
R

D
S

E
T

Fab light chain

Fab heavy chain

Coagulation factor VII

Coagulation factor VII

Tissue factor

Related Entries With Identical Sequence