SMTL ID : 4ymq.1

X-ray co-structure of nuclear receptor ROR-GAMMAT + SRC2 peptide with a benzothiadiazole dioxide inverse agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: C.123, Y.126, S.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.123 Water bridges: A:S.165

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Q.252, A.253, F.255, P.257, K.260 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.253, A:K.260

1 x ZBD: 4-{3-[4-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)benzyl]-2,2-dioxido-2,1,3-benzothiadiazol-1(3H)-yl}-N-[(2R)-4-hydroxybutan-2-yl]-N-methylbutanamide(Non-covalent)

ZBD.3: 21 residues within 4Å: Chain A: Q.43, L.44, C.77, L.81, M.115, V.118, R.121, M.122, R.124, A.125, V.133, F.134, F.135, F.145, L.148, L.153, I.154, I.157, F.158, S.161, H.236 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:R.121, A:M.122, A:V.133, A:I.154, A:I.157, A:I.157, A:F.158, A:F.158 Hydrogen bonds: A:R.124, A:R.124 Water bridges: A:Y.38, A:A.84 pi-Stacking: A:F.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muegge, I. et al., Discovery of 1,3-dihydro-2,1,3-benzothiadiazole 2,2-dioxide analogs as new RORC modulators. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-04-22

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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