- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- hetero-4-1-mer
- Ligands
- 4 x ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid(Non-covalent)(Post Translational Modification)
- 8 x CA: CALCIUM ION(Non-covalent)
CA.2: 6 residues within 4Å:- Chain A: E.95, D.99, D.101, D.104
- Ligands: ZDC.1, CA.3
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.95, A:E.95, A:D.99, A:D.101, A:D.104
CA.3: 7 residues within 4Å:- Chain A: N.21, D.101, N.103, D.104
- Chain D: G.114
- Ligands: ZDC.1, CA.2
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain A- Metal complexes: D:G.114, A:N.21, A:D.101, A:D.101, A:D.104
CA.4: 6 residues within 4Å:- Chain B: E.95, D.99, D.101, D.104
- Ligands: CA.5, ZDC.12
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.95, B:E.95, B:D.99, B:D.101, B:D.104
CA.5: 7 residues within 4Å:- Chain B: N.21, D.101, N.103, D.104
- Chain C: G.114
- Ligands: CA.4, ZDC.12
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Metal complexes: B:N.21, B:D.101, B:D.104, C:G.114
CA.7: 6 residues within 4Å:- Chain C: E.95, D.99, D.101, D.104
- Ligands: ZDC.6, CA.8
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.95, C:E.95, C:D.99, C:D.101, C:D.104
CA.8: 7 residues within 4Å:- Chain B: G.114
- Chain C: N.21, D.101, N.103, D.104
- Ligands: ZDC.6, CA.7
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain B- Metal complexes: C:N.21, C:D.101, C:D.101, C:D.104, B:G.114
CA.10: 6 residues within 4Å:- Chain D: E.95, D.99, D.101, D.104
- Ligands: ZDC.9, CA.11
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:E.95, D:E.95, D:D.99, D:D.101, D:D.104
CA.11: 7 residues within 4Å:- Chain A: G.114
- Chain D: N.21, D.101, N.103, D.104
- Ligands: ZDC.9, CA.10
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain A- Metal complexes: D:N.21, D:D.101, D:D.104, A:G.114
- 1 x OXE: ORTHO-XYLENE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- He, R. et al., Design, crystal structure and atomic force microscopy study of thioether ligated d,l-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa. Chem Sci (2017)
- Release Date
- 2017-09-13
- Peptides
- Fucose-binding lectin II (PA-IIL): ABCD
CYS-TRD-TRP-LYD-LYS-LYD-LYS-LYD-TRP-TRD-CYS-ALA: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- hetero-4-1-mer
- Ligands
- 4 x ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid(Non-covalent)(Post Translational Modification)
- 8 x CA: CALCIUM ION(Non-covalent)
- 1 x OXE: ORTHO-XYLENE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- He, R. et al., Design, crystal structure and atomic force microscopy study of thioether ligated d,l-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa. Chem Sci (2017)
- Release Date
- 2017-09-13
- Peptides
- Fucose-binding lectin II (PA-IIL): ABCD
CYS-TRD-TRP-LYD-LYS-LYD-LYS-LYD-TRP-TRD-CYS-ALA: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E