SMTL ID : 5aii.1 (7 other biounits)

Discovery and characterization of thermophilic limonene-1,2-epoxide hydrolases from hot spring metagenomic libraries. CH55-sample-PEG complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 10 residues within 4Å: Chain A: M.37, F.49, Q.52, L.53, W.60, D.82, F.84, I.94, F.114, F.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.82 Water bridges: A:N.34 PG4.3: 5 residues within 4Å: Chain A: M.1, T.2, A.71, D.104, G.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.1, A:D.104 PG4.6: 11 residues within 4Å: Chain B: Y.32, M.37, F.49, L.50, Q.52, W.60, D.82, F.84, I.94, F.114, F.119 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.52, B:D.82 Water bridges: B:N.34 PG4.10: 7 residues within 4Å: Chain A: R.111 Chain B: E.61, T.62, H.63, E.79, R.95 Ligands: PEG.7 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Water bridges: A:R.111, A:R.111, B:H.63, B:T.81 Hydrogen bonds: B:E.61, B:E.61, B:H.63

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: A.57, D.59, R.83, F.84, T.85 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.57, A:D.59 Hydrogen bonds: A:D.59 ACT.8: 4 residues within 4Å: Chain A: V.35, P.36 Chain B: D.115, Q.118 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Q.118 Water bridges: B:D.115 ACT.9: 5 residues within 4Å: Chain B: A.57, D.59, R.83, F.84, T.85 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:D.59 Hydrogen bonds: B:T.85 Water bridges: B:D.59

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: G.69, D.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.67 Water bridges: A:A.71 EDO.5: 4 residues within 4Å: Chain A: G.74, D.101, V.102, T.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.74 Water bridges: A:T.108 EDO.11: 6 residues within 4Å: Chain B: R.73, G.74, D.101, V.102, A.103, T.108 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.73, B:G.74, B:G.74, B:V.102 Water bridges: B:T.108

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 4 residues within 4Å: Chain B: T.62, H.63, I.65 Ligands: PG4.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrandi, E.E. et al., Discovery and Characterization of Thermophilic Limonene-1,2-Epoxide Hydrolases from Hot Spring Metagenomic Libraries. FEBS J. (2015)

Release Date

2015-06-17

Peptides

LIMONENE-1,2-EPOXIDE HYDROLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

LIMONENE-1,2-EPOXIDE HYDROLASE

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