SMTL ID : 5aii.5 (7 other biounits)

Discovery and characterization of thermophilic limonene-1,2-epoxide hydrolases from hot spring metagenomic libraries. CH55-sample-PEG complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 9 residues within 4Å: Chain A: N.34, F.49, L.53, W.60, D.82, F.84, F.114, F.119 Ligands: PEG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.32, A:D.82 PG4.4: 5 residues within 4Å: Chain A: M.1, T.2, A.71, D.104, G.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.1 PG4.5: 12 residues within 4Å: Chain B: Y.32, M.37, F.49, L.50, Q.52, L.53, W.60, D.82, F.84, I.94, F.114, F.119 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.82 Water bridges: B:N.34

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: F.119, M.123 Ligands: PG4.1 No protein-ligand interaction detected (PLIP) PEG.3: 4 residues within 4Å: Chain A: A.67, G.69, D.70, A.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.67

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 4 residues within 4Å: Chain A: V.35, P.36 Chain B: D.115, Q.118 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.35, A:P.36, B:D.115 Hydrogen bonds: B:Q.118

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 3 residues within 4Å: Chain B: G.69, D.70, R.73 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.69 EDO.8: 3 residues within 4Å: Chain B: G.117, M.120, A.121 No protein-ligand interaction detected (PLIP) EDO.9: 3 residues within 4Å: Chain B: T.2, L.4, E.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.5 EDO.10: 5 residues within 4Å: Chain B: A.57, I.58, D.59, R.83, T.85 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.83, B:R.83, B:T.85 EDO.11: 3 residues within 4Å: Chain B: D.88, R.90, M.123 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:M.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrandi, E.E. et al., Discovery and Characterization of Thermophilic Limonene-1,2-Epoxide Hydrolases from Hot Spring Metagenomic Libraries. FEBS J. (2015)

Release Date

2015-06-17

Peptides

LIMONENE-1,2-EPOXIDE HYDROLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

LIMONENE-1,2-EPOXIDE HYDROLASE

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