SMTL ID : 5aii.7 (7 other biounits)

Discovery and characterization of thermophilic limonene-1,2-epoxide hydrolases from hot spring metagenomic libraries. CH55-sample-PEG complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 9 residues within 4Å: Chain A: M.37, F.49, Q.52, L.53, D.82, F.84, I.94, F.114, F.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.82 Water bridges: A:Y.32, A:Y.32, A:N.34 PG4.7: 12 residues within 4Å: Chain B: N.34, M.37, F.49, Q.52, L.53, W.60, D.82, F.84, I.94, F.114, F.119 Ligands: PGE.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.82

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: R.73, G.74, T.75, D.101, V.102, A.103, T.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.73, A:G.74, A:V.102

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: D.115, Q.118 Chain B: V.35, P.36 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.118 Water bridges: A:D.115, A:Q.118

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 5 residues within 4Å: Chain A: H.63, E.79, T.81, R.95 Chain B: R.111 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.81 PGE.9: 3 residues within 4Å: Chain A: R.111 Chain B: H.63, R.95 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Water bridges: A:D.33, A:R.111, A:R.111, A:Y.113, B:E.79 Hydrogen bonds: B:R.95 PGE.10: 4 residues within 4Å: Chain B: Q.52, F.119, M.123 Ligands: PG4.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.52

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: M.37, P.38, M.120 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: T.91, A.93, Q.122 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.93, A:Q.122 EDO.11: 3 residues within 4Å: Chain B: G.69, D.70, A.71 2 PLIP interactions: 2 interactions with chain B Water bridges: B:T.68, B:D.70

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.8: 6 residues within 4Å: Chain B: M.1, T.2, A.71, A.72, D.104, G.105 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.1 Water bridges: B:G.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrandi, E.E. et al., Discovery and Characterization of Thermophilic Limonene-1,2-Epoxide Hydrolases from Hot Spring Metagenomic Libraries. FEBS J. (2015)

Release Date

2015-06-17

Peptides

LIMONENE-1,2-EPOXIDE HYDROLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

LIMONENE-1,2-EPOXIDE HYDROLASE

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