SMTL ID : 8qwi.1

Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.344, I.364, A.366, N.473, W.474 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.344 Water bridges: A:N.367, A:N.473 SO4.3: 5 residues within 4Å: Chain B: Y.344, I.364, A.366, N.473, W.474 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.344, B:Y.344 Water bridges: B:N.367, B:N.473

2 x 6N4: 2-(1H-BENZIMIDAZOL-2-YLSULFANYL)ETHANOL(Non-covalent)

6N4.2: 10 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, Y.384, Q.385, M.420, Y.467, H.525, W.526 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.384, A:W.526 Hydrogen bonds: A:D.336, A:Y.384, A:Y.467 Water bridges: A:Q.385 pi-Stacking: A:F.268 6N4.4: 10 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, Y.384, Q.385, M.420, Y.467, H.525, W.526 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.384, B:W.526 Hydrogen bonds: B:D.336 Water bridges: B:Q.385 pi-Stacking: B:F.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunge, A. et al., Exploring serial crystallography for drug discovery. Iucrj (2024)

Release Date

2024-08-14

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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