SMTL ID : 5c4o.1

Identification of a Novel Allosteric Binding Site for RORgt Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x 4F1: 4-{1-[2-chloro-6-(trifluoromethyl)benzoyl]-1H-indazol-3-yl}benzoic acid(Non-covalent)

4F1.1: 20 residues within 4Å: Chain A: W.51, A.55, L.58, T.59, I.62, Q.63, L.87, K.88, M.92, V.214, L.217, Q.218, Q.221, A.230, A.231, F.232, L.235, Y.236, L.239, F.240 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.51, A:T.59, A:I.62, A:I.62, A:M.92, A:V.214, A:L.235, A:Y.236, A:L.239, A:L.239, A:L.239, A:F.240, A:F.240, A:F.240 Hydrogen bonds: A:Q.63, A:A.231, A:F.232, A:F.232 Halogen bonds: A:V.214

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: L.58, F.122, I.134 No protein-ligand interaction detected (PLIP) GOL.3: 3 residues within 4Å: Chain A: Q.63, Y.64, E.67 No protein-ligand interaction detected (PLIP) GOL.4: 4 residues within 4Å: Chain A: S.147, D.149, H.187, T.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.147, A:D.149 GOL.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: R.36, Q.43, E.120, R.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.43 Salt bridges: A:R.36, A:R.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheepstra, M. et al., Identification of an allosteric binding site for ROR gamma t inhibition. Nat Commun (2015)

Release Date

2015-12-16

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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