SMTL ID : 5cin.1

Crystal Structure of non-neutralizing version of 4E10 (DeltaLoop) with epitope bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: S.131, V.132, V.218, K.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.131, A:V.132, A:V.132, A:K.220 GOL.2: 7 residues within 4Å: Chain A: R.37, Q.38, A.39, R.42, G.43, E.45, R.62 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.37, A:R.37, A:A.39, A:G.43, A:E.45, A:R.62 GOL.3: 5 residues within 4Å: Chain B: Q.11, L.13, R.18, A.19, T.20 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.11, B:Q.11, B:T.20 GOL.4: 11 residues within 4Å: Chain A: F.177, P.178, V.180, S.188, L.189, S.190 Chain B: Q.161, S.163, S.177, S.178, T.179 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:F.177, A:S.188, A:S.190, B:S.163, B:S.178, B:T.179

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain B: R.46, V.59, A.60, F.63 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rujas, E. et al., Structural and Thermodynamic Basis of Epitope Binding by Neutralizing and Nonneutralizing Forms of the Anti-HIV-1 Antibody 4E10. J.Virol. (2015)

Release Date

2015-09-23

Peptides

FAB 4E10 HEAVY CHAIN: A
FAB 4E10 LIGHT CHAIN: B
Peptide from MPER region of HIV-1 ENV: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
P

FAB 4E10 HEAVY CHAIN

FAB 4E10 LIGHT CHAIN

Peptide from MPER region of HIV-1 ENV

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