SMTL ID : 5dir.1 (3 other biounits)

membrane protein at 2.8 Angstroms

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x MLE- IIL- SER- ALO- 5BV: Globomycin(Non-covalent)

MLE-IIL-SER-ALO-5BV.1: 17 residues within 4Å: Chain A: N.73, G.75, F.78, L.81, L.91, F.92, A.96, V.99, N.131, R.135, V.141, D.143, N.159, D.162, I.165, T.166 Ligands: OLC.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.78, A:F.78, A:L.81, A:L.91, A:V.99, A:I.165, A:I.165 Hydrogen bonds: A:N.73, A:N.131, A:R.135, A:R.135, A:D.143, A:N.159, A:D.162

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 12 residues within 4Å: Chain A: I.119, F.155, F.158, D.162, S.163, T.166, V.167 Ligands: MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, OLC.4, OLC.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.119, A:F.158, A:F.158, A:T.166 Hydrogen bonds: A:T.166 OLC.3: 9 residues within 4Å: Chain A: S.45, F.48, F.49, E.52, I.59, W.68, L.160 Ligands: OLC.4, OLC.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.48, A:F.48, A:F.49, A:F.49, A:W.68, A:W.68 Hydrogen bonds: A:E.52 OLC.4: 6 residues within 4Å: Chain A: I.59, V.60, V.61, W.68 Ligands: OLC.2, OLC.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.61, A:W.68 OLC.5: 11 residues within 4Å: Chain A: V.23, G.27, P.30, W.31, I.34, L.37, V.38, L.41, K.112 Ligands: OLC.2, OLC.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.31, A:W.31, A:I.34, A:I.34, A:L.37, A:V.38, A:L.41 Hydrogen bonds: A:G.27 OLC.6: 6 residues within 4Å: Chain A: F.26, L.29, P.30, L.32, W.33, F.39 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.32, A:W.33, A:W.33, A:F.39 OLC.7: 5 residues within 4Å: Chain A: F.39, R.89, L.129, Y.133, M.136 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.39, A:F.39, A:F.39, A:Y.133, A:M.136 Hydrogen bonds: A:R.89, A:R.89 Salt bridges: A:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vogeley, L. et al., Structural basis of lipoprotein signal peptidase II action and inhibition by the antibiotic globomycin. Science (2016)

Release Date

2016-03-02

Peptides

Lipoprotein signal peptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Lipoprotein signal peptidase

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