SMTL ID : 5dir.4 (3 other biounits)

membrane protein at 2.8 Angstroms

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x MLE- IIL- SER- ALO- 5BV: Globomycin(Non-covalent)

MLE-IIL-SER-ALO-5BV.1: 16 residues within 4Å: Chain A: N.73, G.75, A.76, F.78, F.92, I.95, A.96, V.99, A.128, N.131, R.135, V.141, D.143, D.162, I.165 Ligands: OLC.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.78, A:F.78, A:F.78, A:F.78, A:F.92, A:I.95, A:I.95, A:A.96, A:A.128, A:I.165, A:I.165 Hydrogen bonds: A:N.73, A:G.75, A:A.76, A:N.131, A:R.135, A:R.135, A:D.143, A:D.162

5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 10 residues within 4Å: Chain A: L.123, F.155, F.158, D.162, S.163, T.166, V.167 Ligands: MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.123, A:F.155, A:F.158 Hydrogen bonds: A:T.166 OLC.3: 9 residues within 4Å: Chain A: V.38, L.41, F.48, F.49, E.52, I.59, W.68, L.160 Ligands: OLC.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.38, A:F.48, A:L.160, A:L.160 OLC.4: 4 residues within 4Å: Chain A: V.61, W.68 Ligands: OLC.3, OLC.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.61 OLC.5: 3 residues within 4Å: Chain A: W.149 Ligands: OLC.4, OLC.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.149 OLC.6: 7 residues within 4Å: Chain A: V.61, I.62, L.65, V.147, W.149, W.153 Ligands: OLC.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.61, A:V.147, A:W.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vogeley, L. et al., Structural basis of lipoprotein signal peptidase II action and inhibition by the antibiotic globomycin. Science (2016)

Release Date

2016-03-02

Peptides

Lipoprotein signal peptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Membrane

We predict this structure to be a membrane protein.
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Lipoprotein signal peptidase

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