SMTL ID : 6fms.2 (3 other biounits)

IMISX-EP of Se-LspA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x MLE- IIL- SER- ALO- 5BV: Globomycin(Non-covalent)

MLE-IIL-SER-ALO-5BV.1: 14 residues within 4Å: Chain A: T.74, L.81, F.92, I.95, A.96, V.99, N.131, R.135, V.141, D.143, N.159, D.162, I.165 Ligands: OLC.8 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.92, A:A.96, A:V.99, A:D.162, A:I.165, A:I.165 Hydrogen bonds: A:N.131, A:R.135, A:R.135, A:D.143, A:N.159, A:D.162

7 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 2 residues within 4Å: Chain A: T.166 Ligands: OLC.8 No protein-ligand interaction detected (PLIP) OLC.3: 8 residues within 4Å: Chain A: V.23, G.27, R.28, P.30, W.31, I.34, K.112, L.123 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.31, A:W.31, A:I.34, A:L.123 Hydrogen bonds: A:G.27, A:R.28, A:K.112 OLC.4: 4 residues within 4Å: Chain A: L.29, P.30, W.33, V.36 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.33, A:W.33, A:V.36 OLC.5: 3 residues within 4Å: Chain A: W.149, R.152, W.153 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.149 Hydrogen bonds: A:R.152 Salt bridges: A:R.152 OLC.6: 3 residues within 4Å: Chain A: E.52, W.68 Ligands: OLC.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.68 Hydrogen bonds: A:E.52 OLC.7: 3 residues within 4Å: Chain A: V.61, W.68 Ligands: OLC.6 No protein-ligand interaction detected (PLIP) OLC.8: 10 residues within 4Å: Chain A: T.74, P.156, F.158, D.162, S.163, T.166 Ligands: MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, OLC.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.158, A:F.158, A:T.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., In situ serial crystallography for rapid de novo membrane protein structure determination. Commun Biol (2018)

Release Date

2018-08-29

Peptides

Lipoprotein signal peptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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Lipoprotein signal peptidase

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