SMTL ID : 6fms.1 (3 other biounits)

IMISX-EP of Se-LspA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x MLE- IIL- SER- ALO- 5BV: Globomycin(Non-covalent)

MLE-IIL-SER-ALO-5BV.1: 15 residues within 4Å: Chain A: N.73, G.75, F.78, L.81, L.91, F.92, A.96, V.99, N.131, R.135, V.141, D.143, D.162, I.165 Ligands: OLC.7 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.78, A:L.81, A:L.91, A:V.99, A:I.165 Hydrogen bonds: A:N.73, A:N.73, A:N.131, A:R.135, A:R.135, A:D.143, A:D.162

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 5 residues within 4Å: Chain A: F.48, E.52, I.59, W.68 Ligands: OLC.3 No protein-ligand interaction detected (PLIP) OLC.3: 3 residues within 4Å: Chain A: V.61, W.68 Ligands: OLC.2 No protein-ligand interaction detected (PLIP) OLC.4: 6 residues within 4Å: Chain A: R.28, P.30, W.31, I.34, L.37 Ligands: OLC.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.31, A:I.34, A:L.37 Hydrogen bonds: A:R.28 OLC.5: 6 residues within 4Å: Chain A: F.26, L.29, P.30, L.32, W.33 Ligands: OLC.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.32 OLC.6: 6 residues within 4Å: Chain A: V.36, F.39, R.89, L.129, M.136 Ligands: OLC.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.36, A:F.39, A:L.129 Hydrogen bonds: A:R.89 OLC.7: 9 residues within 4Å: Chain A: F.158, D.162, S.163, T.166, V.167 Ligands: MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, OLC.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.167, A:V.167 Hydrogen bonds: A:T.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., In situ serial crystallography for rapid de novo membrane protein structure determination. Commun Biol (2018)

Release Date

2018-08-29

Peptides

Lipoprotein signal peptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Lipoprotein signal peptidase

Related Entries With Identical Sequence