SMTL ID : 6fms.3 (3 other biounits)

IMISX-EP of Se-LspA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x MLE- IIL- SER- ALO- 5BV: Globomycin(Non-covalent)

MLE-IIL-SER-ALO-5BV.1: 14 residues within 4Å: Chain A: N.73, F.78, F.92, A.96, A.128, N.131, R.135, V.141, D.143, N.159, D.162, I.165 Ligands: OLC.2, OLC.7 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.78, A:A.96, A:A.128, A:I.165 Hydrogen bonds: A:N.73, A:N.73, A:N.131, A:R.135, A:D.143, A:N.159, A:D.162

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.2: 9 residues within 4Å: Chain A: P.156, A.157, F.158, D.162, S.163, T.166 Ligands: MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.158, A:T.166 Hydrogen bonds: A:A.157 OLC.3: 4 residues within 4Å: Chain A: V.60, V.61, W.68 Ligands: OLC.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.61 Hydrogen bonds: A:V.60 OLC.4: 6 residues within 4Å: Chain A: F.39, L.129, Y.133, M.136, V.137 Ligands: OLC.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.39, A:L.129, A:Y.133 Hydrogen bonds: A:V.137 OLC.5: 6 residues within 4Å: Chain A: R.89, W.90, I.97, S.100, M.136 Ligands: OLC.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.97 Hydrogen bonds: A:R.89 OLC.6: 5 residues within 4Å: Chain A: F.48, E.52, I.59, W.68 Ligands: OLC.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.48 Hydrogen bonds: A:E.52 OLC.7: 2 residues within 4Å: Ligands: MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., In situ serial crystallography for rapid de novo membrane protein structure determination. Commun Biol (2018)

Release Date

2018-08-29

Peptides

Lipoprotein signal peptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Membrane

We predict this structure to be a membrane protein.
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Lipoprotein signal peptidase

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