SMTL ID : 5f9b.1

X-ray crystal structure of PPARgamma in the complex with caulophyllogenin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

1 x 5VN: Caulophyllogenin(Non-covalent)

5VN.1: 15 residues within 4Å: Chain B: I.91, G.94, C.95, R.98, S.99, I.136, Y.137, L.140, L.150, I.151, S.152, M.158, F.173, M.174, H.259 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:R.98, B:I.136, B:Y.137, B:L.140, B:I.151, B:I.151, B:F.173 Hydrogen bonds: B:R.98, B:S.152, B:H.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montanari, R. et al., Screening of saponins and sapogenins from Medicago species as potential PPAR gamma agonists and X-ray structure of the complex PPAR gamma /caulophyllogenin. Sci Rep (2016)

Release Date

2016-06-29

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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