SMTL ID : 6l89.1

Human PPARgamma ligand binding domain complexed with Butyrolactone 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x E7C: methyl (2R)-3-(4-hydroxyphenyl)-2-[[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate(Non-covalent)

E7C.1: 14 residues within 4Å: Chain A: R.90, I.91, G.94, C.95, R.98, S.99, I.136, L.140, L.143, V.149, L.150, I.151, S.152, M.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.99 Salt bridges: A:R.98 E7C.2: 14 residues within 4Å: Chain B: I.91, C.95, R.98, S.99, A.102, I.136, L.140, L.143, V.149, L.150, I.151, S.152, M.158, M.174 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.91, B:R.98, B:L.140, B:L.140, B:I.151 Hydrogen bonds: B:L.150, B:S.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahn, S. et al., Cyclin-Dependent Kinase 5 Inhibitor Butyrolactone I Elicits a Partial Agonist Activity of Peroxisome Proliferator-Activated Receptor gamma. Biomolecules (2020)

Release Date

2020-09-16

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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