SMTL ID : 6k0t.2 (1 other biounit)

Crystal Structure of PPARgamma Ligand Binding Domain in complex with dibenzooxepine derivative compound-17

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CTU: 3-[(1~{E})-1-[8-[(8-chloranyl-2-cyclopropyl-imidazo[1,2-a]pyridin-3-yl)methyl]-3-fluoranyl-6~{H}-benzo[c][1]benzoxepin-11-ylidene]ethyl]-4~{H}-1,2,4-oxadiazol-5-one(Non-covalent)

CTU.1: 23 residues within 4Å: Chain A: F.92, Q.93, C.95, Q.96, S.99, H.133, I.136, Y.137, L.140, V.149, I.151, L.163, F.170, F.173, M.174, H.259, L.262, L.263, I.266, M.273, L.275, L.279, Y.283 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.92, A:F.92, A:F.92, A:I.136, A:Y.137, A:L.163, A:F.170, A:F.173, A:L.275 Hydrogen bonds: A:S.99, A:Y.283, A:Y.283 pi-Stacking: A:F.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamamoto, K. et al., Development of a novel class of peroxisome proliferator-activated receptor (PPAR) gamma ligands as an anticancer agent with a unique binding mode based on a non-thiazolidinedione scaffold. Bioorg.Med.Chem. (2019)

Release Date

2019-10-30

Peptides

Peroxisome proliferator-activated receptor gamma: A
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Peroxisome proliferator-activated receptor gamma

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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