SMTL ID : 5hzc.1

Crystal structure of the complex PPARgamma/AL26-29

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 65W: 2-methyl-2-[4-(naphthalen-1-yl)phenoxy]propanoic acid(Non-covalent)

65W.1: 7 residues within 4Å: Chain A: R.98, A.102, I.136, M.139, L.140, L.143, M.174 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.98, A:R.98, A:R.98, A:A.102, A:M.139, A:L.140, A:L.140, A:L.143 Water bridges: A:R.98 Salt bridges: A:R.98 65W.2: 10 residues within 4Å: Chain B: G.94, C.95, R.98, A.102, I.136, M.139, L.140, L.143, I.151, M.174 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:R.98, B:R.98, B:A.102, B:M.139, B:L.140, B:L.140, B:L.143, B:I.151 Salt bridges: B:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Capelli, D. et al., Structural basis for PPAR partial or full activation revealed by a novel ligand binding mode. Sci Rep (2016)

Release Date

2016-11-23

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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