SMTL ID : 5fe2.2 (1 other biounit)

Crystal structure of human PCAF bromodomain in complex with fragment BR013 (fragment 3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x 5WV: 2-methyl-3~{H}-isoindol-1-one(Non-covalent)

5WV.1: 8 residues within 4Å: Chain A: P.35, F.36, V.40, E.44, A.45, Y.90, N.91, Y.97 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.44, A:A.45, A:Y.90, A:Y.90 Hydrogen bonds: A:N.91 pi-Stacking: A:Y.97, A:Y.97

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: I.103 No protein-ligand interaction detected (PLIP) EDO.3: 2 residues within 4Å: Chain A: R.42, Y.49 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.42, A:R.42 Water bridges: A:Y.49 EDO.4: 3 residues within 4Å: Chain A: Q.15, S.18, S.22 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.22, A:S.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Structure-Based Identification of Inhibitory Fragments Targeting the p300/CBP-Associated Factor Bromodomain. J.Med.Chem. (2016)

Release Date

2016-01-13

Peptides

Histone acetyltransferase KAT2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Histone acetyltransferase KAT2B

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