SMTL ID : 5lvq.1 (1 other biounit)

Crystal structure of human PCAF bromodomain in complex with compound-D (CPD-D), N-methyl-2-(tetrahydro-2H-pyran-4-yloxy)benzamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.64, N.67, Y.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.67 Water bridges: A:R.64 EDO.2: 2 residues within 4Å: Chain A: G.116, I.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.118, A:I.118 EDO.3: 4 residues within 4Å: Chain A: K.21, L.24, Q.25, S.62 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.21, A:K.28, A:S.62 Water bridges: A:S.62

1 x 2LX: N-methyl-2-(tetrahydro-2H-pyran-4-yloxy)benzamide(Non-covalent)

2LX.4: 8 residues within 4Å: Chain A: P.35, F.36, V.40, E.44, A.45, Y.90, N.91, Y.97 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.40, A:A.45, A:Y.90, A:Y.97 Hydrogen bonds: A:P.35, A:N.91 pi-Stacking: A:Y.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Navratilova, I. et al., Discovery of New Bromodomain Scaffolds by Biosensor Fragment Screening. ACS Med Chem Lett (2016)

Release Date

2016-10-26

Peptides

Histone acetyltransferase KAT2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase KAT2B

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